Changes between Version 17 and Version 18 of Other/Summer/2024/aRvR
- Timestamp:
- Jul 10, 2024, 2:33:09 PM (6 days ago)
Legend:
- Unmodified
- Added
- Removed
- Modified
-
Other/Summer/2024/aRvR
v17 v18 9 9 **Protein Visualization** 10 10 11 Visualizing the structures from the Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) in AR/VR usingUnity11 Interactive visualization of the protein structures from the Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) in AR/VR using Microsoft Hololens and Unity 12 12 13 **Ocean Graphic Data**13 **Oceanographic Data** 14 14 15 15 Visualizing sensor data from the Rutgers-deployed Slocum glider using the Meta Quest 3 and Unity … … 38 38 39 39 RCSB PDB 40 - Explored .pdb files on the RCSB PDB website to get a sense of what features are available to us 40 41 - Successfully visualized proteins through PyMol and imported models into Unity 41 - Began work on direct conversion of PDB files into Unity without use of external program42 - Began work on direct conversion of PDB files into Unity without use of external PyMol program due to compatibility and licensing issues 42 43 43 44 RUCOOL … … 48 49 49 50 RCSB PDB 51 - No more PyMol, importing .pdb files directly into Unity 52 - Finalized approach to building protein structures --> layer by layer approach 50 53 - Visualized and refined assets of proteins in Unity, streamlining code and procedures 51 54 … … 57 60 58 61 RCSB PDB 62 - Continued work on protein development, building atoms, helices, links, connections 59 63 - Optimized protein generation to improve performance 60 64 - Implemented voice commands for viewing options … … 63 67 - Rescale the protein 64 68 - Summon the protein in front of user 65 -Worked on creating VR-compatible gauge in Unity to display ocean data (ex: temperature, salinity, and pressure)66 69 67 70 RUCOOL … … 70 73 - Began implementation of gauge to go along with variable readout 71 74 - Added a toggle to "follow" the path of the glider 75 - Worked on creating VR-compatible gauge in Unity to display ocean data (ex: temperature, salinity, and pressure) 72 76 73 77 **Week 6 (7/01 - 7/03)** 74 78 75 79 RCSB PDB 76 - Cleaned up code, made it easier to read 77 - Redid Helix algorithm, allowing for improved Helix generation 80 - Cleaned up code, made it easier to read and commented it out 81 - Redid Helix algorithm, allowing for improved Helix generation --> ribbon like look comparable to professional visualizations 82 - Met with RCSB PDB experts and discussed goals and project direction; They suggested we look into importing structures directly from Mol* 78 83 79 84 RUCOOL … … 84 89 - Realized that the problem was regarding the pivot point of the needles and its position on the gauge and fix that. 85 90 91 **Week 7 (7/8 - 7/11)** 86 92 93 RCSB PDB 94 - Explored Mol* as advised, but realized it was not compatible with our approach --> sticking to building proteins from scratch 95 - Did some research into amino acid ribbons (wavy line-like structures going through the proteins in professional visualizations) and created them ourselves 96 - Finished creation of the proteins (all major elements visualized!) 87 97 98 RUCOOL
